Resources

Selected Publications

Peer-reviewed research using the e-NIOS BioInfoMiner platform for multi-omic data interpretation.

Bioinformatics · 2025

Pre-Meta: priors-augmented retrieval for LLM-based metadata generation

Tinn P., Sørbø S., Jiang S., Voutetakis K., Giounis S.M., Pilalis E., Papadodima O., Roman D. Bioinformatics. 2025. doi: 10.1093/bioinformatics/btaf519

Read on Oxford Academic →
Nature Communications · 2022

Regulated IRE1α-dependent decay (RIDD)-mediated reprograming of lipid metabolism in cancer

Nat Commun. 2022 May 6;13(1):2493. doi: 10.1038/s41467-022-30159-0. PMID: 35524156; PMCID: PMC9076827

Read on Nature.com →
J Cell Biol · 2020

Role of the early secretory pathway in SARS-CoV-2 infection

Sicari et al. (2020). J Cell Biol 219 (9): e202006005

doi: 10.1083/jcb.202006005 →
Database · 2020

RA-map: building a state-of-the-art interactive knowledge base for rheumatoid arthritis

Singh et al. Database, Volume 2020

doi: 10.1093/database/baaa017 →
EMBO Molecular Medicine · 2019

Control of anterior GRadient 2 (AGR2) dimerization links endoplasmic reticulum proteostasis to inflammation

M Maurel et al. EMBO Molecular Medicine (2019) e10120, DOI 10.15252/emmm.201810120

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Nature Communications · 2018

Inhibition of IRE1 RNase activity modulates the tumor cell secretome and enhances response to chemotherapy

Logue, McGrath, Cleary et al. Nature Communications 2018; 9: 3267.

Read on PMC →
Cell Metabolism · 2018

Low-Protein Diet Induces IRE1α-Dependent Anticancer Immunosurveillance

Rubio-Patiño C., Bossowski J. et al. Cell Metabolism. Mar. 2018. PMID: 29481744

Read on Cell.com →
EMBO Molecular Medicine · 2018

Dual IRE1 RNase functions dictate glioblastoma development

Lhomond S., Avril T., Dejeans N., Voutetakis K., Doultsinos D., McMahon M. et al. EMBO Molecular Medicine. 2018.

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BMC Genomics · 2017

Evolving DNA methylation and gene expression markers of B-cell chronic lymphocytic leukemia

Georgiadis, P., Liampa, I. et al. BMC Genomics, 18(1).

doi: 10.1186/s12864-017-4117-4 →
Scientific Reports · 2017

Blood-based omic profiling supports female susceptibility to tobacco smoke-induced cardiovascular diseases

Chatziioannou, A., Georgiadis, P. et al. Scientific Reports, 7, 42870.

doi: 10.1038/srep42870 →
Scientific Reports · 2016

Omics for prediction of environmental health effects

Georgiadis, P., Hebels, D. et al. Scientific Reports, 6(1).

doi: 10.1038/srep20544 →
Microarrays · 2015

Cancer Biomarkers from Genome-Scale DNA Methylation

Valavanis, I., Pilalis, E. et al. Microarrays, 4(4).

doi: 10.3390/microarrays4040647 →